Publications

113 entries « 2 of 3 »

2015

Gonen, Shane; DiMaio, Frank; Gonen, Tamir; Baker, David

Design of ordered two-dimensional arrays mediated by noncovalent protein-protein interfaces Journal Article

Science, 348 (6241), pp. 1365–1368, 2015.

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2014

Huang, Po-Ssu; Oberdorfer, Gustav; Xu, Chunfu; Pei, Xue Y; Nannenga, Brent L; Rogers, Joseph M; DiMaio, Frank; Gonen, Tamir; Luisi, Ben; Baker, David

High thermodynamic stability of parametrically designed helical bundles Journal Article

Science, 346 (6208), pp. 481–485, 2014.

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Nannenga, Brent L; Shi, Dan; Hattne, Johan; Reyes, Francis E; Gonen, Tamir

Structure of catalase determined by MicroED Journal Article

Elife, 3 , pp. e03600, 2014.

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Russell, Alistair B; Wexler, Aaron G; Harding, Brittany N; Whitney, John C; Bohn, Alan J; Goo, Young Ah; Tran, Bao Q; Barry, Natasha A; Zheng, Hongjin; Peterson, Brook S; Chou, Seemay; Gonen, Tamir; Goodlett, David R; Goodman, Andrew L; Mougous, Joseph D

A type VI Secretion-Related Pathway in Bacteroidetes Mediates Interbacterial Antagonism Journal Article

Cell Host Microbe, 16 (2), pp. 227–236, 2014.

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Wisedchaisri, Goragot; Park, Min-Sun; Iadanza, Matthew G; Zheng, Hongjin; Gonen, Tamir

Proton-coupled sugar transport in the prototypical major facilitator superfamily protein XylE Journal Article

Nat Commun, 5 , pp. 4521, 2014.

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Nannenga, Brent L; Shi, Dan; Leslie, Andrew G W; Gonen, Tamir

High-resolution structure determination by continuous-rotation data collection in MicroED Journal Article

Nat. Methods, 11 (9), pp. 927–930, 2014.

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Nannenga, Brent L; Gonen, Tamir

Protein structure determination by MicroED Journal Article

Curr. Opin. Struct. Biol., 27 , pp. 24–31, 2014.

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Gonen, Tamir; Waksman, Gabriel

Editorial overview: Membranes: recent methods in the study of membrane protein structure Journal Article

Curr. Opin. Struct. Biol., 27 , pp. iv-v, 2014.

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King, Neil P; Bale, Jacob B; Sheffler, William; McNamara, Dan E; Gonen, Shane; Gonen, Tamir; Yeates, Todd O; Baker, David

Accurate design of co-assembling multi-component protein nanomaterials Journal Article

Nature, 510 (7503), pp. 103–108, 2014.

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Iadanza, Matthew G; Gonen, Tamir

A suite of software for processing MicroED data of extremely small protein crystals Journal Article

J Appl Crystallogr, 47 (Pt 3), pp. 1140–1145, 2014.

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Anderson, Thomas M; Clay, Mary C; Cioffi, Alexander G; Diaz, Katrina A; Hisao, Grant S; Tuttle, Marcus D; Nieuwkoop, Andrew J; Comellas, Gemma ; Maryum, Nashrah ; Wang, Shu ; Uno, Brice E; Wildeman, Erin L; Gonen, Tamir ; Rienstra, Chad M; Burke, Martin D

Amphotericin forms an extramembranous and fungicidal sterol sponge Journal Article

Nat. Chem. Biol., 10 (5), pp. 400–406, 2014.

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2013

Shi, Dan; Nannenga, Brent L; Iadanza, Matthew G; Gonen, Tamir

Three-dimensional electron crystallography of protein microcrystals Journal Article

Elife, 2 , pp. e01345, 2013.

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Smith, Donelson F; Reichow, Steve L; Esseltine, Jessica L; Shi, Dan; Langeberg, Lorene K; Scott, John D; Gonen, Tamir

Intrinsic disorder within an AKAP-protein kinase A complex guides local substrate phosphorylation Journal Article

Elife, 2 , pp. e01319, 2013.

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Gold, Matthew G; Gonen, Tamir; Scott, John D

Local cAMP signaling in disease at a glance Journal Article

J. Cell. Sci., 126 (Pt 20), pp. 4537–4543, 2013.

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Reichow, Stephen ; Gonen, Tamir

Dynamic Modulation of Water Permeability in the Lens Aquaporin-0 Inproceedings

Proceedings of Microscopy & Microanalysis, pp. 50–51, 2013.

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Silverman, Julie M; Agnello, Danielle M; Zheng, Hongjin; Andrews, Benjamin T; Li, Mo; Catalano, Carlos E; Gonen, Tamir; Mougous, Joseph D

Haemolysin Coregulated Protein Is an Exported Receptor and Chaperone of Type VI Secretion Substrates Journal Article

Mol. Cell, 51 (5), pp. 584–593, 2013.

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Reichow, Steve L; Clemens, Daniel M; Freites, Alfredo J; Nemeth-Cahalan, Karin L; Heyden, Matthias; Tobias, Douglas J; Hall, James E; Gonen, Tamir

Allosteric mechanism of water-channel gating by Ca²⁺-calmodulin Journal Article

Nat. Struct. Mol. Biol., 20 (9), pp. 1085–1092, 2013.

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Zheng, Hongjin; Wisedchaisri, Goragot; Gonen, Tamir

Crystal structure of a nitrate/nitrite exchanger Journal Article

Nature, 497 (7451), pp. 647–651, 2013.

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Nannenga, Brent L; Iadanza, Matthew G; Vollmar, Breanna S; Gonen, Tamir

Overview of Electron Crystallography of Membrane Proteins: Crystallization and Screening Strategies Using Negative Stain Electron Microscopy Journal Article

Curr Protoc Protein Sci, 72 (1), pp. 17.15.1–17.15.11, 2013.

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Shi, Liang; Zheng, Hongjin; Zheng, Hui; Borkowski, Brian A; Shi, Dan; Gonen, Tamir; Jiang, Qiu-Xing

Voltage sensor ring in a native structure of a membrane-embedded potassium channel Journal Article

Proc. Natl. Acad. Sci. U.S.A., 110 (9), pp. 3369–3374, 2013, (Retracted).

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2012

Filbin, Megan E; Vollmar, Breanna S; Shi, Dan; Gonen, Tamir; Kieft, Jeffrey S

HCV IRES manipulates the ribosome to promote the switch from translation initiation to elongation Journal Article

Nat. Struct. Mol. Biol., 20 (2), pp. 150–158, 2012.

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Wisedchaisri, Goragot; Gonen, Tamir

Phasing Electron Diffraction Data by Molecular Replacement: Strategy for Structure Determination and Refinement Book Chapter

Electron Crystallography of Soluble and Membrane Proteins, 955 , Chapter 14, pp. 243–272, 2012.

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Gonen, Tamir

The Collection of High-Resolution Electron Diffraction Data Book Chapter

Electron Crystallography of Soluble and Membrane Proteins, 955 , Chapter 9, pp. 153–169, 2012.

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Stokes, David L; Ubarretxena-Belandia, Iban; Gonen, Tamir; Engel, Andreas

High-Throughput Methods for Electron Crystallography Book Chapter

Electron Crystallography of Soluble and Membrane Proteins, 955 , Chapter 15, pp. 273–296, 2012.

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Umbreit, Neil T; Gestaut, Daniel R; Tien, Jerry F; Vollmar, Breanna S; Gonen, Tamir ; Asbury, Charles L; Davis, Trisha N

The Ndc80 kinetochore complex directly modulates microtubule dynamics Journal Article

Proc. Natl. Acad. Sci. U.S.A., 109 (40), pp. 16113–16118, 2012.

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Gonen, Shane; Akiyoshi, Bungo; Iadanza, Matthew G; Shi, Dan; Duggan, Nicole; Biggins, Sue; Gonen, Tamir

The structure of purified kinetochores reveals multiple microtubule-attachment sites Journal Article

Nat. Struct. Mol. Biol., 19 (9), pp. 925–929, 2012.

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Gonen, Tamir; Waksman, Gabriel

Recent progress in membrane protein structures and investigation methods Journal Article

Curr. Opin. Struct. Biol., 22 (4), pp. 467–468, 2012.

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Jiang, Qiu-Xing; Gonen, Tamir

The influence of lipids on voltage-gated ion channels Journal Article

Curr. Opin. Struct. Biol., 22 (4), pp. 529–536, 2012.

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King, Neil P; Sheffler, William; Sawaya, Michael R; Vollmar, Breanna S; Sumida, John P; André, Ingemar; Gonen, Tamir; Yeates, Todd O; Baker, David

Computational Design of Self-Assembling Protein Nanomaterials with Atomic Level Accuracy Journal Article

Science, 336 (6085), pp. 1171–1174, 2012.

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2011

Lo, Sheng-Ying; Brett, Christopher L; Plemel, Rachael L; Vignali, Marissa; Fields, Stanley; Gonen, Tamir; Merz, Alexey J

Intrinsic tethering activity of endosomal Rab proteins Journal Article

Nat. Struct. Mol. Biol., 19 (1), pp. 40–47, 2011.

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Gold, Matthew G; Reichow, Steve L; O'Neill, Susan E; Weisbrod, Chad R; Langeberg, Lorene K; Bruce, James E; Gonen, Tamir; Scott, John D

AKAP2 anchors PKA with aquaporin-0 to support ocular lens transparency Journal Article

EMBO Mol Med, 4 (1), pp. 15–26, 2011.

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Wisedchaisri, Goragot; Reichow, Steve L; Gonen, Tamir

Advances in Structural and Functional Analysis of Membrane Proteins by Electron Crystallography Journal Article

Structure, 19 (10), pp. 1381–1393, 2011.

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Korotkov, Konstantin V; Gonen, Tamir; Hol, Wim G J

Secretins: dynamic channels for protein transport across membranes Journal Article

Trends Biochem. Sci., 36 (8), pp. 433–443, 2011.

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Wisedchaisri, Goragot; Gonen, Tamir

Fragment-Based Phase Extension for Three-Dimensional Structure Determination of Membrane Proteins by Electron Crystallography Journal Article

Structure, 19 (7), pp. 976–987, 2011.

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Reichow, Steve L; Korotkov, Konstantin V; Gonen, Melissa; Sun, Ji; Delarosa, Jaclyn R; Hol, Wim G J; Gonen, Tamir

The binding of cholera toxin to the periplasmic vestibule of the type II secretion channel Journal Article

Channels (Austin), 5 (3), pp. 215–218, 2011.

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Jehle, Stefan; Vollmar, Breanna S; Bardiaux, Benjamin; Dove, Katja K; Rajagopal, Ponni; Gonen, Tamir; Oschkinat, Hartmut; Klevit, Rachel E

N-terminal domain of αB-crystallin provides a conformational switch for multimerization and structural heterogeneity Journal Article

Proc. Natl. Acad. Sci. U.S.A., 108 (16), pp. 6409–6414, 2011.

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Budzinski, Kristi L; Sgro, Allyson E; Fujimoto, Bryant S; Gadd, Jennifer C; Shuart, Noah G; Gonen, Tamir; Bajjaleih, Sandra M; Chiu, Daniel T

Synaptosomes as a Platform for Loading Nanoparticles into Synaptic Vesicles Journal Article

ACS Chem Neurosci, 2 (5), pp. 236–241, 2011.

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2010

Akiyoshi, Bungo ; Sarangapani, Krishna K; Powers, Andrew F; Nelson, Christian R; Reichow, Steve L; Arellano-Santoyo, Hugo ; Gonen, Tamir ; Ranish, Jeffrey A; Asbury, Charles L; Biggins, Sue

Tension directly stabilizes reconstituted kinetochore-microtubule attachments Journal Article

Nature, 468 (7323), pp. 576–579, 2010.

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Wisedchaisri, Goragot; Dranow, David M; Lie, Thomas J; Bonanno, Jeffrey B; Patskovsky, Yury; Ozyurt, Sinem A; Sauder, Michael J; Almo, Steven C; Wasserman, Stephen R; Burley, Stephen K; Leigh, John A; Gonen, Tamir

Structural Underpinnings of Nitrogen Regulation by the Prototypical Nitrogen-Responsive Transcriptional Factor NrpR Journal Article

Structure, 18 (11), pp. 1512–1521, 2010.

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Reichow, Steve L; Korotkov, Konstantin V; Hol, Wim G J; Gonen, Tamir

Structure of the cholera toxin secretion channel in its closed state Journal Article

Nat. Struct. Mol. Biol., 17 (10), pp. 1226–1232, 2010.

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Sedlak, Ruth Hall; Hnilova, Marketa; Gachelet, Eliora; Przybyla, Lyralynne; Dranow, David; Gonen, Tamir; Sarikaya, Mehmet; Tamerler, Candan; Traxler, Beth

An Engineered DNA-binding Protein Self-assembles Metallic Nanostructures Journal Article

Chembiochem, 11 (15), pp. 2108–2112, 2010.

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Sanowar, Sarah; Singh, Pragya; Pfuetzner, Richard A; André, Ingemar; Zheng, Hongjin; Spreter, Thomas; Strynadka, Natalie C J; Gonen, Tamir; Baker, David; Goodlett, David R; Miller, Samuel I

Interactions of the Transmembrane Polymeric Rings of the Salmonella enterica Serovar Typhimurium type III Secretion System Journal Article

MBio, 1 (3), pp. e00158-10, 2010.

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Tien, Jerry F; Umbreit, Neil T; Gestaut, Daniel R; Franck, Andrew D; Cooper, Jeremy; Wordeman, Linda; Gonen, Tamir; Asbury, Charles L; Davis, Trisha N

Cooperation of the Dam1 and Ndc80 kinetochore complexes enhances microtubule coupling and is regulated by aurora B Journal Article

J. Cell Biol., 189 (4), pp. 713–723, 2010.

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Zheng, Hongjin; Taraska, Justin; Merz, Alexey J; Gonen, Tamir

The prototypical H⁺/Galactose Symporter GalP Assembles into Functional Trimers Journal Article

J. Mol. Biol., 396 (3), pp. 593–601, 2010.

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2009

Reichow, Steve L; Gonen, Tamir

Lipid-protein interactions probed by electron crystallography Journal Article

Curr. Opin. Struct. Biol., 19 (5), pp. 560–565, 2009.

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2008

Reichow, Steve L; Gonen, Tamir

Noncanonical Binding of Calmodulin to Aquaporin-0: Implications for Channel Regulation Journal Article

Structure, 16 (9), pp. 1389–1398, 2008.

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Zheng, Hongjin; Wisedchaisri, Goragot; Gonen, Tamir

Single Particle Electron Cryomicroscopy of Bacteriophage P22 Portal Protein Complexes Journal Article

Microscopy and Microanalysis, 14 (S2), pp. 1572–1573, 2008.

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Hite, Richard K; Gonen, Tamir; Harrison, Stephen C; Walz, Thomas

Interactions of lipids with aquaporin-0 and other membrane proteins Journal Article

Pflugers Arch., 456 (4), pp. 651–661, 2008.

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Andrews, Simeon ; Reichow, Steve L; Gonen, Tamir

Electron Crystallography of Aquaporins Journal Article

IUBMB Life, 60 (7), pp. 430–436, 2008.

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Engel, Andreas; Fujiyoshi, Yoshinori; Gonen, Tamir; Walz, Thomas

Junction-forming aquaporins Journal Article

Curr. Opin. Struct. Biol., 18 (2), pp. 229–235, 2008.

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113 entries « 2 of 3 »